SNP Profiles matching UF 613

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 Key

 1234567891011121314
_Input profile
CGATCCTTCTACCCAGCCATAGAAACCT
1._RUQ_1573
CGATCCTTCTACCCAGCCATAGAAACCT
2._RUQ_1573
__CCTTCTACCCAGCCAT_AAACCT
3._UF_613
CGATCCTTCTACCCAGCCATAGAAACCT
4._UF_613
CGATCCTTCTACCCAGCCATAGAAACCT
5._UF_613
CGATCCTTCTACCCAGCCATAGAAACCT
6._UF_613
CGATCCTTCTACCCAGCCATAGAAACCT
7._UF_613
CGATCCTTCTACCCAGCCATAGAAACCT
8._UF_613
CGATCCTTCTACCCAGCCATAGAAACCT
9._UF_613
CGATCCTTCTACCCAGCCATAGAAACCT
10._UF_613
CGATCCTTCTACCCAGCCATAGAAACCT
11._UF_613
CGATCCTTCTACCCAGCCATAGAAACCT
12._UF_613
CGATCCTTCTACCCAGCCATAGAAACCT
13._UF_613
CGATCCTTCTACCCAGCCATAGAAACCT
14._GC-05-057-2-08
CGATCCTTCTACCCAGCCATAGAAACCT
15._GC-05-057-2-08
CGATCCTTCTACCCAGCCATAGAAACCT
16._GC-05-057-2-08
CGATCCTTCTACCCAGCCATAGAAACCT
17._GC-05-057-2-08
CGATCCTTCTACCCAGCCATAGAAACCT
18._GC-05-057-2-08
CGATCCTTCTACCCAGCCATAGAAACCT
19._GC-08-046-1-57
CGATCCTTCTACCCAGCCATAGAAACCT
20._GC-08-046-1-57
CGATCCTTCTACCCAGCCATAGAAACCT
21._GC-08-046-1-57
CGATCCTTCTACCCAGCCATAGAAACCT
22._GC-08-046-1-57
CGATCCTTCTACCCAGCCATAGAAACCT
23._GC-08-046-1-57
CGATCCTTCTACCCAGCCATAGAAACCT
24._GC-08-046-1-57
CGATCCTTCTACCCAGCCATAGAAACCT
25._GC-08-046-1-57
CGATCCTTCTACCCAGCCATAGAAACCT
26._UF_613
CGATCCTTCTACCCAGCCATAGAAACCT
27._GC-08-046-1-57
CGATCCTTCTACCCAGCCATAGAAACCT
28._UF_613
CGATCCTTCTAC_AGCCATAGAAACCT
 1516171819202122232425262728
_Input profile
GTCCACCTAATTGGCTTTGGATTTAGCT
1._RUQ_1573
GTCCACCTAATTGGCTTTGGATTTAGCT
2._RUQ_1573
GTCCACCT_TTGGCT____AGCT
3._UF_613
GTCCACCT_TTGGCTTTGGATTTAGCT
4._UF_613
GTCCACCT_TTGGCTTTGGATTTAGCT
5._UF_613
GTCCACCT_TTGGCTTTGGATTTAGCT
6._UF_613
GTCCACCT_TTGGCTTTGGATTTAGCT
7._UF_613
GTCCACCT_TTGGCTTTGGATTTAGCT
8._UF_613
GTCCACCT_TTGGCTTTGGATTTAGCT
9._UF_613
GTCCACCT_TTGGCTTTGGATTTAGCT
10._UF_613
GTCCACCT_TTGGCTTTGGATTTAGCT
11._UF_613
GTCCACCT_TTGGCTTTGGATTTAGCT
12._UF_613
GTCCACCT_TTGGCTTTGGATTTAGCT
13._UF_613
GTCCACCT_TTGGCTTTGGATTTAGCT
14._GC-05-057-2-08
GTCCACCT_TTGGCTTTGGATTTAGCT
15._GC-05-057-2-08
GTCCACCT_TTGGCTTTGGATTTAGCT
16._GC-05-057-2-08
GTCCACCT_TTGGCTTTGGATTTAGCT
17._GC-05-057-2-08
GTCCACCT_TTGGCTTTGGATTTAGCT
18._GC-05-057-2-08
GTCCACCT_TTGGCTTTGGATTTAGCT
19._GC-08-046-1-57
GTCCACCT_TTGGCTTTGGATTTAGCT
20._GC-08-046-1-57
GTCCACCT_TTGGCTTTGGATTTAGCT
21._GC-08-046-1-57
GTCCACCT_TTGGCTTTGGATTTAGCT
22._GC-08-046-1-57
GTCCACCT_TTGGCTTTGGATTTAGCT
23._GC-08-046-1-57
GTCCACCT_TTGGCTTTGGATTTAGCT
24._GC-08-046-1-57
GTCCACCT_TTGGCTTTGGATTTAGCT
25._GC-08-046-1-57
GTCCACCT_TTGGCTTTGGATTTAGCT
26._UF_613
GTCCACCT_TTGGCTTTGGATTTAGCT
27._GC-08-046-1-57
GTCCACCT_TTGGCTTTGGATTTAGCT
28._UF_613
GTCCACCTAATTGGCTTTGGATTTAGCT
 293031323334353637383940  
_Input profile
AGATCTCTGTCCACCTCTGGAGCTX_XX_X
1._RUQ_1573
AGATCTCTGTCCACCTCTGGAGCTX_XX_X
2._RUQ_1573
____GT___CTGGAG_X_XX_X
3._UF_613
AGATCTCTGTCCAACTCTGGAGCTX_XX_X
4._UF_613
AGATCTCTGTCCAACTCTGGAGCTX_XX_X
5._UF_613
AGATCTCTGTCCAACTCTGGAGCTX_XX_X
6._UF_613
AGATCTCTGTCCAACTCTGGAGCTX_XX_X
7._UF_613
AGATCTCTGTCCAACTCTGGAGCTX_XX_X
8._UF_613
AGATCTCTGTCCAACTCTGGAGCTX_XX_X
9._UF_613
AGATCTCTGTCCAACTCTGGAGCTX_XX_X
10._UF_613
AGATCTCTGTCCAACTCTGGAGCTX_XX_X
11._UF_613
AGATCTCTGTCCAACTCTGGAGCTX_XX_X
12._UF_613
AGATCTCTGTCCAACTCTGGAGCTX_XX_X
13._UF_613
AGATCTCTGTCCAACTCTGGAGCTX_XX_X
14._GC-05-057-2-08
AGATCTCTGTCCAACTCTGGAGCTX_XX_X
15._GC-05-057-2-08
AGATCTCTGTCCAACTCTGGAGCTX_XX_X
16._GC-05-057-2-08
AGATCTCTGTCCAACTCTGGAGCTX_XX_X
17._GC-05-057-2-08
AGATCTCTGTCCAACTCTGGAGCTX_XX_X
18._GC-05-057-2-08
AGATCTCTGTCCAACTCTGGAGCTX_XX_X
19._GC-08-046-1-57
AGATCTCTGTCCAACTCTGGAGCTX_XX_X
20._GC-08-046-1-57
AGATCTCTGTCCAACTCTGGAGCTX_XX_X
21._GC-08-046-1-57
AGATCTCTGTCCAACTCTGGAGCTX_XX_X
22._GC-08-046-1-57
AGATCTCTGTCCAACTCTGGAGCTX_XX_X
23._GC-08-046-1-57
AGATCTCTGTCCAACTCTGGAGCTX_XX_X
24._GC-08-046-1-57
AGATCTCTGTCCAACTCTGGAGCTX_XX_X
25._GC-08-046-1-57
AGATCTCTGTCCAACTCTGGAGCTX_XX_X
26._UF_613
AGATCTCTGTCCAA_CTGGAGCTX_XX_X
27._GC-08-046-1-57
AGATCTCTGTCCAA_CTGGAGCTX_XX_X
28._UF_613
AGAT_CTGTCCACCTCTGGAGTTX_XX_X

Input profile: UF_613

 
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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

1._UF_613 RUQ_1573

identical
40 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

2._UF_613 RUQ_1573

identical
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

3._UF_613

98.7 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5208 2
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

4._UF_613

98.7 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5208 3
 Dapeng Zhang, 2016

5._UF_613

98.7 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5208 1 > FP
 Dapeng Zhang, 2016

6._UF_613

98.7 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5208 4 > FP
 Dapeng Zhang, 2016

7._UF_613

98.7 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5208 5 > FP
 Dapeng Zhang, 2016

8._UF_613

98.7 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8157 6
 Dapeng Zhang, 2016

9._UF_613

98.7 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8157 7
 Dapeng Zhang, 2016

10._UF_613

98.7 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8157 10
 Dapeng Zhang, 2016

11._UF_613

98.7 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8157 1 > FP
 Dapeng Zhang, 2016

12._UF_613

98.7 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8157 3 > FP
 Dapeng Zhang, 2016

13._UF_613

98.7 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8157 4 > FP
 Dapeng Zhang, 2016

14._UF_613 GC-05-057-2-08

98.7 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

15._UF_613 GC-05-057-2-08

98.7 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

16._UF_613 GC-05-057-2-08

98.7 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

17._UF_613 GC-05-057-2-08

98.7 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018

18._UF_613 GC-05-057-2-08

98.7 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP3
 Mars, 2018

19._UF_613 GC-08-046-1-57

98.7 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

20._UF_613 GC-08-046-1-57

98.7 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP2
 Mars, 2018

21._UF_613 GC-08-046-1-57

98.7 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP3
 Mars, 2018

22._UF_613 GC-08-046-1-57

98.7 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

23._UF_613 GC-08-046-1-57

98.7 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

24._UF_613 GC-08-046-1-57

98.7 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

25._UF_613 GC-08-046-1-57

98.7 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

26._UF_613

98.7 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8157 7
 Dapeng Zhang, 2016

27._UF_613 GC-08-046-1-57

98.7 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

28._UF_613

98.7 %
38 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 4A A93 T2
 Dapeng Zhang, 2016

 

  Key to SNP Markers

1TcSNP25 2TcSNP32 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP193 7TcSNP226 8TcSNP230 9TcSNP242 10TcSNP372
11TcSNP429 12TcSNP469 13TcSNP529 14TcSNP534 15TcSNP560
16TcSNP577 17TcSNP591 18TcSNP619 19TcSNP645 20TcSNP723
21TcSNP872 22TcSNP891 23TcSNP917 24TcSNP929 25TcSNP953
26TcSNP994 27TcSNP998 28TcSNP1060 29TcSNP1062 30TcSNP1075
31TcSNP1144 32TcSNP1165 33TcSNP1253 34TcSNP1270 35TcSNP1350
36TcSNP1414 37TcSNP1442 38TcSNP1458 39TcSNP1484 40TcSNP1520